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  • Welcome to SeqIKPy!

🏁 Getting started

  • Features
  • Installation
  • Getting started

🔬 Methodology

  • 3D pose alignment
  • Inverse kinematics
  • Limitations

📚 Tutorials

  • Using SeqIKPy for Drosophila grooming
  • Using SeqIKPy for Drosophila locomotion
  • Visualization tools

💬 References

  • API Reference
  • API Reference
  • Bibliography
  • Repository
  • Open issue
  • .rst

  • API Reference
    • Submodules
    • seqikpy.alignment module
      • AlignPose
        • AlignPose.align_head()
        • AlignPose.align_leg()
        • AlignPose.align_pose()
        • AlignPose.find_scale_leg()
        • AlignPose.find_stationary_indices()
        • AlignPose.from_file_path()
        • AlignPose.get_fixed_pos()
        • AlignPose.get_mean_length()
        • AlignPose.thorax_mid_pts
      • convert_from_anipose_to_dict()
      • convert_from_df3d_to_dict()
      • convert_from_df3dpp_to_dict()
    • seqikpy.data module
      • get_pts2align()
    • seqikpy.head_inverse_kinematics module
      • IMPORTANT NOTES:
      • AxesTuple
        • AxesTuple.X_AXIS
        • AxesTuple.Y_AXIS
        • AxesTuple.Z_AXIS
      • HeadInverseKinematics
        • HeadInverseKinematics.angle_between_segments()
        • HeadInverseKinematics.compute_antenna_pitch()
        • HeadInverseKinematics.compute_antenna_yaw()
        • HeadInverseKinematics.compute_head_angles()
        • HeadInverseKinematics.compute_head_pitch()
        • HeadInverseKinematics.compute_head_roll()
        • HeadInverseKinematics.compute_head_yaw()
        • HeadInverseKinematics.derotate_vector()
        • HeadInverseKinematics.get_ant_vector()
        • HeadInverseKinematics.get_head_vector()
        • HeadInverseKinematics.get_head_vector_horizontal()
        • HeadInverseKinematics.get_head_vector_mid()
        • HeadInverseKinematics.get_plane()
        • HeadInverseKinematics.get_rest_antenna_pitch()
        • HeadInverseKinematics.get_rest_head_pitch()
    • seqikpy.kinematic_chain module
      • AxesTuple
        • AxesTuple.X_AXIS
        • AxesTuple.Y_AXIS
        • AxesTuple.Z_AXIS
      • KinematicChainBase
        • KinematicChainBase.create_leg_chain()
      • KinematicChainGeneric
        • KinematicChainGeneric.create_leg_chain()
      • KinematicChainSeq
        • KinematicChainSeq.create_leg_chain()
        • KinematicChainSeq.create_leg_chain_stage_1()
        • KinematicChainSeq.create_leg_chain_stage_2()
        • KinematicChainSeq.create_leg_chain_stage_3()
        • KinematicChainSeq.create_leg_chain_stage_4()
    • seqikpy.leg_inverse_kinematics module
      • LegInvKinBase
        • LegInvKinBase.calculate_fk()
        • LegInvKinBase.calculate_ik()
        • LegInvKinBase.calculate_ik_stage()
        • LegInvKinBase.get_scale_factor()
        • LegInvKinBase.run_ik_and_fk()
      • LegInvKinGeneric
        • LegInvKinGeneric.calculate_ik_stage()
        • LegInvKinGeneric.run_ik_and_fk()
      • LegInvKinSeq
        • LegInvKinSeq.calculate_ik_stage()
        • LegInvKinSeq.run_ik_and_fk()
    • seqikpy.utils module
      • calculate_body_size()
      • compute_length_of_segment()
      • compute_mean_length_of_segments()
      • df_to_nparray()
      • dict_to_nparray_angle()
      • dict_to_nparray_pose()
      • dist_calc()
      • drop_level_dlc()
      • fix_coxae_pos()
      • from_anipose_to_array()
      • from_sdf()
      • get_array()
      • get_distance_btw_vecs()
      • get_fps_from_video()
      • get_leg_length()
      • get_length_of_segments()
      • get_mean_length_of_segments()
      • get_mean_quantile()
      • get_stim_array()
      • get_stim_intervals()
      • interpolate_joint_angles()
      • interpolate_signal()
      • leg_length_model()
      • load_file()
      • load_stim_data()
      • save_file()
    • seqikpy.visualization module
      • animate_3d_points()
      • fig_to_array()
      • generate_color_map()
      • get_frames_from_video_ffmpeg()
      • get_plot_config()
      • get_video_writer()
      • load_grid_plot_data()
      • make_video()
      • plot_3d_points()
      • plot_grid()
      • plot_grid_generator()
      • plot_joint_angle()
      • plot_trailing_kp()
      • resize_frame()
      • resize_rgb_frame()
      • video_frames_generator()
    • Module contents

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By P. Gizem Özdil

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